Bayesian Optimization with Approximate Set Kernels

Author(s): Jungtaek Kim, Michael McCourt, Tackgeun You, Saehoon Kim, Seungjin Choi
Venue: ECML PKDD
Year: 2021

Paper: https://link.springer.com/article/10.1007/s10994-021-05949-0

Abstract

We propose a practical Bayesian optimization method over sets, to minimize a black-box function that takes a set as a single input. Because set inputs are permutation-invariant, traditional Gaussian process-based Bayesian optimization strategies which assume vector inputs can fall short. To address this, we develop a Bayesian optimization method with set kernel that is used to build surrogate functions. This kernel accumulates similarity over set elements to enforce permutation-invariance, but this comes at a greater computational cost. To reduce this burden, we propose two key components: (i) a more efficient approximate set kernel which is still positive-definite and is an unbiased estimator of the true set kernel with upper-bounded variance in terms of the number of subsamples, (ii) a constrained acquisition function optimization over sets, which uses symmetry of the feasible region that defines a set input. Finally, we present several numerical experiments which demonstrate that our method outperforms other methods.

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